KTH-Zenodo-FAIRrecords-test
Published November 20, 2023 | Version v1
Dataset Metadata-only

Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data

Creators

  • 1. SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden
  • 2. Max Planck Institute for Biology Tübingen, Tübingen, Germany

Description

Source Data for a publication: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. 

Includes the data sets to generate the results. 

Contains five different experiment types:

- Pst  bacterial infiltration experiment
- Enrichment experiment with different array types
- Comparison between SmT vs. Amp-seq
- Outdoor-grown leaf experiments
- Sterile leaf experiment

For each of the experiments are included (if generated, see the README file):
- Gene count matrices
- Microbial taxa count matrices
- Bright field images
- Alignment files (Spot files)
- Putative microbial reads and related probe information
- Data for enrichment analysis
- Fluorescent images and corresponding fluorescent values

Additional details

Related works

Is derived from
Publication: 10.5281/zenodo.8308137 (DOI)
Is published in
Preprint: 10.1101/2022.07.18.496977 (DOI)
Journal article: 10.1038/s41587-023-01979-2 (DOI)